PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020462-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family SRS
Protein Properties Length: 209aa    MW: 23175.2 Da    PI: 8.9844
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020462-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7021716.3e-53131465154
              DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95 
                         +++CqdCGnqakk+C++ RCRtCC+++gf+C+thv+stW+p ++rr+rqqqlaaa   +  + + +++kr+         ++    +ss+ 
  WALNUT_00020462-RA  13 SSRCQDCGNQAKKECVYLRCRTCCRNKGFQCQTHVRSTWIPLYRRRQRQQQLAAAVLPQHLRVRGHNPKRQS--------QI----TSSG- 90 
                         579**************************************************9977665433333333222........22....2222. PP

              DUF702  96 skkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                             +e +++P+ev+ +a f c+r++sv+d +e+++aYqtavsigGh+fkGiLydqG+++
  WALNUT_00020462-RA  91 ----SEEANFPAEVHLRAAFFCIRLGSVNDaAEDQYAYQTAVSIGGHLFKGILYDQGPDH 146
                         ....34567*********************88999***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.2E-5113145IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.1E-251657IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.4E-2296144IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MLMQGGIGGS FTSSRCQDCG NQAKKECVYL RCRTCCRNKG FQCQTHVRST WIPLYRRRQR  60
QQQLAAAVLP QHLRVRGHNP KRQSQITSSG SEEANFPAEV HLRAAFFCIR LGSVNDAAED  120
QYAYQTAVSI GGHLFKGILY DQGPDHESNC TAGEGSSLAP QPPKLLNAAD LANITTNPAY  180
TETLHPPIFP FPFTTTFMPG TQFLQRPKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236969.12e-67PREDICTED: protein SHI RELATED SEQUENCE 3
TrEMBLB9RHA84e-65B9RHA8_RICCO; Putative uncharacterized protein
STRINGPOPTR_0009s12450.12e-64(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99692541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-43Lateral root primordium (LRP) protein-related